Publications

DIVING-PAM-II & DIVING-PAM (preceding model)

2016

Chauka LJ, Steinert G, Mtolera MSP: Influence of local environmental conditions and bleaching histories on the diversity and distribution of Symbiodinium in reef-building corals in Tanzania.

African Journal of Marine Science 38: 57-64
http://dx.doi.org/...

2016

Dao LHT, Beardall J: Effects of lead on two green microalgae Chlorella and Scenedesmus: photosystem II activity and heterogeneity.

Algal Research 16: 150-159
https://doi.org/...

2016

Kavousi J, Parkinson JE, Nakamura T: Combined ocean acidification and low temperature stressors cause coral mortality.

Coral Reefs 35: 903–907
http://dx.doi.org/...


2016

Rosa IC, Rocha RJM, Lopes A, Cruz ICS, Calado R, Bandarra N, Kikuchi RK, Soares AMVM, Serôdio J, Rosa R: Impact of air exposure on the photobiology and biochemical profile of an aggressive intertidal competitor, the zoanthid Palythoa caribaeorum.

Marine Biology 163: 222
https://doi.org/...

2016

Röthig T, Ochsenkühn MA, Roik A, van der Merwe R, Voolstra CR: Long-term salinity tolerance is accompanied by major restructuring of the coral bacterial microbiome.

Molecular Ecology 25: 1308–1323
http://dx.doi.org/...

2015

Browne NK, Tay JKL, Low J, Larson O, Todd PA: Fluctuations in coral health of four common inshore reef corals in response to seasonal and anthropogenic changes in water quality.

Marine Environmental Research 105: 39-52
https://doi.org/...


2015

Celis-Plá PSM, Hall-Spencer JM, Horta PA, Milazzo M, Korbee N, Cornwall CE, Figueroa FL: Macroalgal responses to ocean acidification depend on nutrient and light levels.

Frontiers in Marine Science 2: 26
https://doi.org/...

2015

Ziegler M, Roder C, Büchel C, Voolstra CR: Niche acclimatization in Red Sea corals is dependent on flexibility of host-symbiont association.

Marine Ecology Progress Series 533: 149–161
https://doi.org/...

2014

Kemp DW, Hernandez-Pech X, Iglesias-Prieto R, Fitt WK, Schmidt GW: Community dynamics and physiology of Symbiodinium spp. before, during, and after a coral bleaching event.

Limnology and Oceanography 59: 788–797
https://doi.org/...


2014

Yaakub SM, Chen E, Bouma TJ, Erftemeijer PLA, Todd PA: Chronic light reduction reduces overall resilience to additional shading stress in the seagrass Halophila ovalis.

Marine Pollution Bulletin 83: 467-474
https://doi.org/...

2013

Cornwall CE, Hepburn CD, Pilditch CA, Hurd CL: Concentration boundary layers around complex assemblages of macroalgae: Implications for the effects of ocean acidification on understory coralline algae.

Limnology and Oceanography 58: 121–130
https://doi.org/...

2013

Ocampo-Alvarez H, García-Mendoza E, Govindjee: Antagonist effect between violaxanthin and de-epoxidated pigments in nonphotochemical quenching induction in the qE deficient brown alga Macrocystis pyrifera.

Biochimica et Biophysica Acta (BBA) - Bioenergetics 1827: 427-437
https://doi.org/...


2012

Bouzon ZL, Ferreira EC, dos Santos R, Scherner F, Horta PA, Maraschin M, Schmidt ÉC: Influences of cadmium on fine structure and metabolism of Hypnea musciformis (Rhodophyta, Gigartinales) cultivated in vitro.

Protoplasma 249: 637–650
https://doi.org/...

2012

Schmidt ÉC, Pereira B, dos Santos, RW, Gouveia C, Costa GB, Faria GSM, Scherner F, Horta PA, Martins RdP, Latini A, Ramlov F, Maraschin M, Bouzon ZL: Responses of the macroalgae Hypnea musciformis after in vitro exposure to UV-B.

Aquatic Botany 100: 8-17
https://doi.org/...

2012

Shearer TL, Rasher DB, Snell TW, Hay ME: Gene expression patterns of the coral Acropora millepora in response to contact with macroalgae.

Coral Reefs 31: 1177–1192
https://doi.org/...


2011

Cartaxana P, Ruivo M, Hubas C, Davidson I, Serôdio J, Jesus B: Physiological versus behavioral photoprotection in intertidal epipelic and epipsammic benthic diatom communities.

Journal of Experimental Marine Biology and Ecology 620: 163-172
https://doi.org/...

2011

Negri AP, Flores F, Röthig T, Uthicke S: Herbicides increase the vulnerability of corals to rising sea surface temperature.

Limnology and Oceanography 56: 471–485
https://doi.org/...

2011

Putnam HM, Edmunds PJ: The physiological response of reef corals to diel fluctuations in seawater temperature.

Journal of Experimental Marine Biology and Ecology 396: 216-223
https://doi.org/...


2011

Sinutok S, Hill R, Doblin MA, Wuhrer R, Ralph PJ: Warmer more acidic conditions cause decreased productivity and calcification in subtropical coral reef sediment-dwelling calcifiers.

Limnology and Oceanography 56: 1200–1212
https://doi.org/...

2011

Tolosa I, Treignier C, Grover R, Ferrier-Pagès C: Impact of feeding and short-term temperature stress on the content and isotopic signature of fatty acids, sterols, and alcohols in the scleractinian coral Turbinaria reniformis.

Coral Reefs 30: 763–774
https://doi.org/...

2010

Choi T-S, Kang E-J, Kim J-H, Kim K-Y: Effect of salinity on growth and nutrient uptake of Ulva pertusa (Chlorophyta) from an eelgrass bed.

ALGAE 25: 17-26
https://doi.org/...


2010

Edwards MS, Kim KY: Diurnal variation in relative photosynthetic performance in giant kelp Macrocystis pyrifera (Phaeophyceae, Laminariales) at different depths as estimated using PAM fluorometry.

Aquatic Botany 92: 119-128
https://doi.org/...

2009

Davoult D, Migné A, Créach A, Gévaert F, Hubas C, Spilmont N, Boucher G: Spatio-temporal variability of intertidal benthic primary production and respiration in the western part of the Mont Saint-Michel Bay (Western English Channel, France).

Hydrobiologia 620: 163-172
http://www.mnhn.fr/... .pdf

2009

Evertsen J, Johnsen G: Seagrass photosynthesis controls rates of calcification and photosynthesis of calcareous macroalgae in a tropical seagrass meadow.

Marine Biology 156: 847–859
https://doi.org/...


2009

Figueroa FL, Korbee N, Carrillo P, Medina-Sánchez JM, Mata M, Bonomi J, Sánchez-Castillo PM: The effects of UV radiation on photosynthesis estimated as chlorophyll fluorescence in Zygnemopsis decussata (Chlorophyta) growing in a high mountain lake (Sierra Nevada, Southern Spain).

Journal of Limnology 68: 206-216
http://www.jlimnol.it/... .pdf

2009

Roleda M, Campana GL, Wiencke C, Hanelt D, Quartino ML, Wulff A: Sensitivity of Antarctic Urospora penicilliformis (Ulotrichales, Chlorophyta) to ultraviolet radiation is life-stage dependent.

Journal of Phycology 45: 600 - 609
http://epic.awi.de/... .pdf

2009

Semesi IS, Beer S, Björk M: Seagrass photosynthesis controls rates of calcification and photosynthesis of calcareous macroalgae in a tropical seagrass meadow.

Marine Ecology Progress Series 382: 41-47
https://doi.org/...


2008

Ekelund NGA, Nygård CA, Nordström R, Gylle AM: In situ study of relative electron transport rates in the marine macroalga Fucus vesiculosus in the Baltic Sea at different depths and times of year.

Journal of Applied Phycology 20: 751-756
https://www.mh.se/... .pdf

2008

Hancke K, Hancke TB, Olsen LM, Johnsen G, Glud RN: Temperature effects on microalgal photosynthesis - light responses measured by O2 production, pulse-amplitude-modulated fluorescence, and 14C assimilation.

Journal of Phycology 44: 501–514
http://www.hancke.net/... .pdf

2008

Hancke TB, Hancke K, Johnsen G, Sakshaug E: Rate of O2 production derived from pulse-amplitude-modulated fluorescence: testing three biooptical approaches against measured O2-production rate.

Journal of Phycology 44: 803–813
http://www.hancke.net/... .pdf


2008

Piniak GA, Storlazzi CD: Diurnal variability in turbidity and coral fluorescence on a fringing reef flat: Southern Molokai, Hawaii.

Estuarine, Coastal and Shelf Science 77: 56-64
http://domex.nps.edu/... .pdf

2008

Rodolfo-Metalpa R, Huot Y, Ferrier-Pagès C: Photosynthetic response of the Mediterranean zooxanthellate coral Cladocora caespitosa to the natural range of light and temperature.

The Journal of Experimental Biology 211, 1579-1586
http://jeb.biologists.org/...

2008

Rodrigues LJ, Grottoli AG, Lesser MP: Long-term changes in the chlorophyll fluorescence of bleached and recovering corals from Hawaii.

The Journal of Experimental Biology 211: 2502-2509
http://jeb.biologists.org/...


2007

Carpenter L, Patterson MR: Water flow influences the distribution of photosynthetic efficiency within colonies of the scleractinian coral Montastrea annularis (Ellis and Solander, 1786); implications for coral bleaching.

Journal of Experimental Marine Biology and Ecology 351: 10–26
http://seacamel.livingoceans
foundation.org/... .pdf

2007

Migné A, Gévaert F, Créach A, Spilmont N, Chevalier E, Davoult D: Photosynthetic activity of intertidal microphytobenthic communities during emersion: in situ measurements of chlorophyll fluorescence (PAM) and CO2 flux (IRGA).

Journal of Phycology 43: 864–873
http://www3.interscience.wiley.com/...

2006

Franklin DJ, Cedrés CMM, Hoegh-Guldberg O: Increased mortality and photoinhibition in the symbiotic dinoflagellates of the Indo–Pacific coral Stylophora pistillata (Esper) after summer bleaching.

Marine Biology 149: 633-642
http://www.uea.ac.uk/... .pdf


2006

Sasil-Orbita ML, Mukai H: A comparative study of the photosynthetic activity among three temperate seagrass species in Northern Japan.

Marine Ecology 27: 388–396
http://mediterranean.
seagrassonline.org/... .pdf

2005

Fine M, Meroz-Fine E, Hoegh-Guldberg O: Tolerance of endolithic algae to elevated temperature and light in the coral Montipora monasteriata from the southern Great Barrier Reef.

The Journal of Experimental Biology 208: 75-81
http://jeb.biologists.org/...

2004

Takahashi S, Nakamura T, Sakamizu M, van Woesik R, Yamasaki H: Repair machinery of symbiotic photosynthesis as the primary target of heat stress for reef-building corals.

Plant Cell Physiology 45: 251–255
http://www.hawaii.edu/himb/... .pdf


2003

Lovelock C, Feller IC: Photosynthetic performance and resource utilization of two mangrove species coexisting in a hypersaline scrub forest.

Oecologia 134: 455–462
http://si-pddr.si.edu/dspace/... .pdf

2003

Jones RJ, Heyward AJ: The effects of Produced Formation Water (PFW) on coral and isolated symbiotic dinoflagellates of coral.

Marine and Freshwater Research 54: 153-162
http://www.bios-mep.info/... .pdf

2002

Glud RN, Rysgaard S, Kühl M: A laboratory study on O2 dynamics and photosynthesis in ice algal communities: quantification by microsensors, O2 exchange rates, 14C incubations and a PAM fluorometer.

Marine Ecology Progress Series 27: 301–311
http://www.int-res.com/... .pdf


2001

Jones RJ, Hoegh-Guldberg O: Diurnal changes in the photochemical efficiency of the symbiotic dinoflagellates (Dinophyceae) of corals: photoprotection, photoinactivation and the relationship to coral bleaching.

Plant Cell and Environment 24: 89-99
http://www.bios-mep.info/... .pdf

2001

Kühl M, Glud RN, Borum J, Roberts R, Rysgaard S: Photosynthetic performance of surface associated algae below sea ice as measured with a pulse amplitude modulated (PAM) fluorometer and O2 microsensors.

Marine Ecology Progress Series 223: 1-14
http://www.zi.ku.dk/... .pdf

2001

Ralph PJ, Gademann R, Larkum AWD: Zooxanthellae expelled from bleached corals at 33°C are photosynthetically competent.

Marine Ecology Progress Series 220: 163–168
http://www.int-res.com/... .pdf


2001

Perkins RG, Underwood GJC, Brotas V, Snow GC, Jesus B, Ribeiro L: Responses of microphytobenthos to light: primary production and carbohydrate allocation over an emersion period.

Marine Ecology Progress Series 223: 101–112
http://www.int-res.com/... .pdf

2001

Rysgaard, Kühl M, Glud RN, Hansen JW: Biomass, production, and horizontal patchiness of sea ice algae in a high-Arctic fjord (Young Sound, NE-Greenland).

Marine Ecology Progress Series 223:15-26
http://www.int-res.com/... .pdf

2001

Seddon S, Cheshire AC: Photosynthetic response of Amphibolis antarctica and Posidonia australis to temperature and desiccation using chlorophyll fluorescence.

Marine Ecology Progress Series 220: 119–130
http://digital.library.adelaide.
edu.au/... .pdf


1998

Beer S, Ilan M, Eshel A, Weil A and Brickner I: Use of pulse modulated (PAM) fluorometry for in situ measurements of photosynthesis in two Red Sea faviid corals.

Marine Biology 131: 607-612
http://www.tau.ac.il/lifesci/... .pdf

1998

Beer S and Ilan M: In situ measurements of photosynthetic irradiance responses of two Red Sea sponges growing under dim light conditions.

Marine Biology 131: 613-617
http://mondrian.tau.ac.il/... .pdf

1998

Beer S, Vilenkin B, Weil A, Veste M, Susel L and Eshel A: Measuring photosynthetic rates in seagrasses by pulse amplitude modulated (PAM) fluorometry.

Marine Ecology Progress Series 174: 293-300
http://www.int-res.com/... .pdf


1997

Jones AB and Dennison WC: Photosynthetic capacity of coral reef systems: Investigations into ecological application of the underwater PAM fluorometer.

In JG Greenwood and NJ Hall, eds, Proceedings of the Australian Coral Reef Society 75th Anniversary Conference, Heron Island October 1997. Australian Coral Reef Society, Brisbane. pp. 105-118
http://ian.umces.edu/... .pdf